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Species belonging to selected taxon:

Populus tremula x Populus tremuloides



ABOUT THIS RECORD

ID: MNEST002196
species: Populus tremula x Populus tremuloides
miRNA family: MIR1447
source: miRNEST

Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CAGAATTGCAGTGCCTTGATC

miRNA*
TCATGGCACTGCAATTCTAAA

mismatches: 3
bulges: 0

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pre-miRNA
CTCGTGAACGAAGGAGGCCCTAATCATGGCACTGCAATTCTAAATATCTGTTGGCATGTTGCGATGCCAGACGTTTGAAATTGACATATCATTTGTTAAT
CAGAATTGCAGTGCCTTGATC
AGGGCTTTGTTTGTTCCTGT


dot-bracket secondary structure
..((.(((((((.((((((((.((((.((((((((((((((((((.((...((((((......)))))))).))))...(((((((.......)))))))
.)))))))))))))).)))).
)))))))).))))))).)).



SIMILARITIES
miRBase ptc-MIR1447: 2e-37

PMRD ptc-miRf11238-akr: 4e-41

microPC miR1447: 1e-50
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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